Ninpo roots are found in the scroll called Ryusen no Maki of Hisshin Ginkoroku
and the Izumo Hishoden collection of scrolls. Highest teachings placed in the
Ryoko no Maki (Tiger and dragon scrolls) known separately as the Ryu no maki
and the Tora no maki.
Amatsu Tatara Hibumi no Maki
(Main Scrolls)
Hibumi Shiron
Shinpi Kansei no Maki
Kanseiron no Maki
Shinrihen no Maki
Kanagihen no Maki
Hokyo Hiden no Maki
Tenmon Chimon no Maki
Chikujo no Maki
Jinei no Maki
Gunrykau no Maki
Juho Kajutsu no Maki
Kishajutsu no Maki
Kenpo Hisohen no Maki
Sojutsu Hibumi no Maki
Naginata Hishohen no Maki
Bojutsu Hihohen no Maki
Jutaijutsu Kappohen no Maki
Bekkan
Information taken from the Amatsu Tatara can be found in the following ryuha:
Kukishin/Kukishinden ryu
Kijin Chosui ryu
Shinden Tatara ryu
Takagi Yoshin ryu
Togakure ryu
Hakuun ryu
Gyokko ryu
Koto ryu
Gikan ryu
Shinden Fudo ryu
Examples:
Kukishin ryu
Kumo Kiri Hiho (changing of the weather)
Rikujintsu Hiho (ways to improve the 5 senses)
Fudo Kanashibari no Jutsu
Kia Kishi no Jutsu (How to kill with kujikiri and Kiai)
Takagi Yoshin ryu
Kasumi Ougi, Sodezutsu, Hiyaku (cannons and bombs)
Bo Yose Ho
Hakuun Ryu
Onshin Tongyo no Jutsu
Suichu Hakka no Jutsu (candle used in water)
Tanemura Sensei's scrolls:
Shinden Amatsu Tatara Kyo,
Amatsu Tatara Tora no Maki
Shinden Amatsu Tatara Kangi no Maki
Tatara Hiruko Den
This is how the scrolls are broken down in the Hontai Takagi Yoshin ryu:
Hontai Takagi Yoshin ryu Jujutsu Menkyo:
Shoden Mokuroku no Maki
Chugokui no Maki
Gokui no Maki
Menkyo no Maki
Kaiden Ryuko no Maki
Kukishin ryu Bojutsu Menkyo no Maki
Kukishin ryu Bojutsu Kaiden no Maki
Tora no Maki
A couple of the ryuha can be connected to specific scrolls:
In March Tenwa 9 (1640's) the Amatsu Tatara was rewritten and reorganized by
Fujiwara no Kamatari, who was awarded a copy by Emperor Tenchi (38th Tenno Tenchi).
The original was divided into 5 scrolls, which were in turn divided into 36
sections and 9 subtitles. The most important scrolls were just as John wrote
them out. However, it makes little sense unless without some description, so
here is some:
Amatsu Tatara Hibumi no Maki
Hibumi Shiron
Shinpi Kansei no Maki
Kanseiron no Maki
Shinrihen no Maki
Kanagihen no Maki (Stickfighting scroll)
Hokyo Hiden no Maki
Tenmon Chimon no Maki (Heaven and Earth Strategies scroll)
Chikujo no Maki (Fortification Design scroll)
Jinei no Maki
Gunrykau no Maki (Strategies scroll)
Juho Kajutsu no Maki (Ten Ways of Using Fire scroll)
Kishajutsu no Maki (Archery on Horseback scroll)
Kenpo Hisohen no Maki (Swordsmanship scroll)
Sojutsu Hibumi no Maki (Spear Fighting scroll)
Naginata Hishohen no Maki (Halberd Fighting scroll)
Bojutsu Hihohen no Maki (Staff Fighting scroll)
Jutaijutsu Kappohen no Maki (Grappling Fighting scroll)
Bekkan (Sword Fighting scroll)
There are a few to add to that - About 6 Kukishin derivatives
Hon Tai Kukishin Chosui Ryu
Betsu Den Kukishin Ryu
Minaki Den Kukishin Ryu Bojutsu
Nakatomi Hyoho
Tenshin Hyoho
Tatara Shinden Ryu (in addition to Shinden Tatara)